mlMLToDicomTools.h

Go to the documentation of this file.

// Copyright (c) Fraunhofer MEVIS, Germany. All rights reserved.
// **InsertLicense** code
//----------------------------------------------------------------------------------

//----------------------------------------------------------------------------------
 
#pragma once
 
#include "MLMLToDicomToolsSystem.h"
#include <mlModuleIncludes.h>
#include <DCMTree_Lib.h>
 
ML_START_NAMESPACE
 
// Forward of volume representation of DirectDicomImport module.
class _DicomDateTimeTagIds;
class BitImage;

namespace MLToDicomTools {

    ML_MLToDicomTools_EXPORT void getSpacingImagePositionAndOrientationPatientFromMLWorldMatrix(MedicalImageProperties imgProps,
                                                                                                Vector3                &pixelSpacing,
                                                                                                Vector3                &imagePositionPatient,
                                                                                                Vector6                &imageOrientationPatient,
                                                                                                std::string            *issueMessages=nullptr);

    ML_MLToDicomTools_EXPORT void setPixelData(DCMTree::TagPtr   pixelDataTag, 
                                               PagedImage        &inImg,
                                               MLDataType        overrideDataType=ML_INVALID_DATA_TYPE,
                                               double            *minVal=nullptr,
                                               double            *maxVal=nullptr,
                                               const SubImageBox *overrideBox=nullptr);

    ML_MLToDicomTools_EXPORT void setVectorGridData(DCMTree::TagPtr vecGridDataTag, 
                                                    PagedImage      &inImg);
    
    ML_MLToDicomTools_EXPORT std::string addAndSetSEGPixelDataTag(DCMTree::TreePtr dcmTree, 
                                                                  const BitImage   &bitImage,
                                                                  bool             writePadded);
    
    ML_MLToDicomTools_EXPORT std::string appendImagePixelModuleTags(DCMTree::TreePtr  resultTree,
                                                                    unsigned int      samplesPerPixel,
                                                                    const std::string &photometricInterpretation,
                                                                    unsigned int      rows,
                                                                    unsigned int      columns,
                                                                    unsigned int      bitsAllocated,
                                                                    unsigned int      bitsStored,
                                                                    unsigned int      highBit,
                                                                    unsigned int      pixelRepresentation,
                                                                    bool              writePlanarConfiguration=false,
                                                                    unsigned int      planarConfiguration=0,
                                                                    bool              writeMinMaxPixelValue=false,
                                                                    double            smallestPixelValue=0,
                                                                    double            largestPixelValue=0,
                                                                    MLint             numberOfColorChannels=0,
                                                                    const std::vector<std::string> &cDimInfos=std::vector<std::string>());

    ML_MLToDicomTools_EXPORT std::string setSegmentationBinaryImagePixelTags(DCMTree::TreePtr &dcmTree,
                                                                             const BitImage   &inputBitImage);
 

    ML_MLToDicomTools_EXPORT std::string setSegmentationFractionalImagePixelTags(DCMTree::TreePtr &dcmTree,
                                                                                 const PagedImage &inputBitImage);
 
    // Forward to the internally used parameter container describing for 
    // example additional multiframe parameters.
    class AdvancedTagSetUpArgs;
    
    ML_MLToDicomTools_EXPORT SubImageBox determineFrameRegion(DCMTree::TreePtr     dcmTree,
                                                              const FieldContainer *treeInfos,
                                                              PagedImage           &inImg,
                                                              Vector3              *srcImgPosPatient = nullptr,
                                                              Vector3              *dstImgPosPatient = nullptr,
                                                              std::string          *errorMessage     = nullptr,
                                                              bool                 useFullTUDimExtentFromInImgInSliceWiseUpdate=false,
                                                              AdvancedTagSetUpArgs *configParams     = nullptr);
    
    ML_MLToDicomTools_EXPORT bool setUpPhotometricInterpretation(DCMTree::TreePtr               dcmTree,
                                                                 MLint                          numColorChannels,
                                                                 const std::vector<std::string> &cDimInfos);
    
    // TODO: Support DCMTree_FloatPixelData and DCMTree_DoubleFloatPixelData
    ML_MLToDicomTools_EXPORT std::string setImagePixelTags(DCMTree::TreePtr     dcmTree,
                                                           const FieldContainer *treeInfos,
                                                           PagedImage           &inImg,
                                                           bool                 adjustSliceWise,
                                                           bool                 reportNonOrthoWorldMatrix,
                                                           AdvancedTagSetUpArgs *configParams=nullptr);
};
 
ML_END_NAMESPACE