Skeleton objects represent centerline voxels stored in a VesselEdge object. More...

#include <mlSkeleton.h>

Inheritance diagram for Skeleton:

Public Types
Color type of member Skeleton::label
enum	LABELTYPE { TRACECOLOR , CONTINUOUS }
Public Types inherited from PropertyContainer
typedef PropertyManager::Pointer	ManagerPointer
typedef PropertyManager::ConstPointer	ConstManagerPointer
typedef PropertyManager::PropertyMap	PropertyMap

Public Member Functions
	Skeleton (const PropertyManager::Pointer &manager, const Vector3 &pos=Vector3(0), double minDistance=0, double maxDistance=0)
	Constructor.
	Skeleton (const Skeleton &other)
	Copy Constructor.
Skeleton &	operator= (const Skeleton &other)
void	copyProperties (const Skeleton *other)
bool	operator== (const Skeleton &other) const
bool	operator!= (const Skeleton &other) const
	STATIC_GRAPH_PROPERTY (double, area, Area)
	STATIC_GRAPH_PROPERTY (double, distanceLabel, DistanceLabel)
	STATIC_GRAPH_PROPERTY (double, freeLabel, FreeLabel)
	STATIC_GRAPH_PROPERTY (double, label, Label)
void	addStateToTree (TreeNode *parent) const override
	Attaches the object state as children of the given parent node.
	ML_SET_ADDSTATE_VERSION (5)
	Set current addStateToTree() version number:
void	readStateFromTree (TreeNode *parent) override
	Reads the object state from the children of the given parent node.
Skeleton Position
ImageVector	voxelPos ()
void	transform (const Matrix4 &m)
	Apply a 4x4 homogeneous transformation matrix to the skeleton position.
void	convertToVoxel (Matrix4 *mat)
	convert all coordinates of the skeleton, including its vessel voxels
void	convertToWorld (Matrix4 *mat)
Default Measurements
	STATIC_GRAPH_PROPERTY (double, minDistance, MinDistance)
Encapsulate std::vector<Vector3>: container of vessel voxels coordinates.
size_t	getVoxelNum () const
size_t	numVesselPos () const
void	addVesselPos (const Vector3 &position)
void	addVesselPos (const ImageVector &v)
const Vector3 &	vesselPos (size_t index) const
Vector3 &	vesselPos (size_t index)
ImageVector	vesselVoxelPos (size_t index)
void	clearVesselPos ()
Default Labels
	STATIC_CASTED_GRAPH_PROPERTY (LABELTYPE, MLuint64, labelType, LabelType)
	STATIC_GRAPH_PROPERTY (MLuint64, enumLabel, EnumLabel)
	label to enumerate the skeleton within a graph. not enumerated value is 0. not persistent.
void	setRGBA (float r, float g, float b, float a)
void	setRGBA (float *rgba)
void	getRGBA (float r, float g, float b, float a) const
float *	getRGBA (void)
Public Member Functions inherited from PropertyContainer
	PropertyContainer (const ManagerPointer &manager)
	PropertyContainer (const PropertyContainer &other)
	~PropertyContainer () override
bool	operator== (const PropertyContainer &other) const
	Check for equality (managers and values).
bool	operator!= (const PropertyContainer &other) const
	Check for inequality (managers and values).
void	copyProperties (const PropertyContainer &other)
	Copy all properties from the given container to this object.
const PropertyManager *	getPropertyManager () const
	Get read-only access to the associated property manager.
PropertyManager *	getPropertyManager ()
	Get access to the associated property manager.
PropertyMap	getPropertyMap () const
	Get a map of the contained properties, can be useful for comparison.
size_t	numberOfProperties () const
	Return the number of properties currently available.
const PropertyValue &	property (size_t index) const
	Get the property with index `index` as PropertyValue.
template<typename T>
T &	property (size_t index)
	Get the property with index `index` with type T. Throws boost::bad_get exception if the currently stored property has a different type.
template<typename T>
const T &	property (size_t index) const
	Get the property with index `index` with type T, const version. Throws boost::bad_get exception if the currently stored property has a different type.
const PropertyValue &	property (const std::string &name) const
template<typename T>
T &	property (const std::string &name)
template<typename T>
const T &	property (const std::string &name) const
virtual void	reset ()
	Set all properties to default values.
	ML_ABSTRACT_CLASS_HEADER (PropertyContainer)
void	addStateToTree (TreeNode *parent) const override
	ML_SET_ADDSTATE_VERSION (1)
	Set current addStateToTree() version number:
void	readStateFromTree (TreeNode *parent) override
	Reads the object state from the children of the given parent node.

Static Public Member Functions
static void	setCopyVesselVoxels (bool flag)
	Set global parameter for skeleton copy.
static void	setCopyVesselVoxelsDefault (void)

Friends
class	Graph
class	VesselEdge

Additional Inherited Members
Protected Attributes inherited from PropertyContainer
std::vector< PropertyValue >	_values
ManagerPointer	_manager

Detailed Description

Skeleton objects represent centerline voxels stored in a VesselEdge object.

class Skeleton

Definition at line 34 of file mlSkeleton.h.

Member Enumeration Documentation

◆ LABELTYPE

enum Skeleton::LABELTYPE

Enumerator
TRACECOLOR
CONTINUOUS

Definition at line 96 of file mlSkeleton.h.

Constructor & Destructor Documentation

◆ Skeleton() [1/2]

Skeleton::Skeleton	(	const PropertyManager::Pointer &	manager,
		const Vector3 &	pos = Vector3(0),
		double	minDistance = 0,
		double	maxDistance = 0 )

Constructor.

Referenced by copyProperties(), operator!=(), operator=(), operator==(), and Skeleton().

◆ Skeleton() [2/2]

Skeleton::Skeleton ( const Skeleton & other )

Copy Constructor.

References Skeleton().

Member Function Documentation

◆ addStateToTree()

void Skeleton::addStateToTree ( TreeNode * parent ) const

override

Attaches the object state as children of the given parent node.

◆ addVesselPos() [1/2]

void Skeleton::addVesselPos ( const ImageVector & v )

inline

Definition at line 80 of file mlSkeleton.h.

◆ addVesselPos() [2/2]

void Skeleton::addVesselPos ( const Vector3 & position )

inline

Definition at line 79 of file mlSkeleton.h.

◆ clearVesselPos()

void Skeleton::clearVesselPos ( )

inline

Definition at line 84 of file mlSkeleton.h.

◆ convertToVoxel()

void Skeleton::convertToVoxel ( Matrix4 * mat )

convert all coordinates of the skeleton, including its vessel voxels

References convertToVoxel().

Referenced by convertToVoxel().

◆ convertToWorld()

void Skeleton::convertToWorld ( Matrix4 * mat )

References convertToWorld().

Referenced by convertToWorld().

◆ copyProperties()

void Skeleton::copyProperties ( const Skeleton * other )

References Skeleton().

◆ getRGBA() [1/2]

void Skeleton::getRGBA	(	float *	r,
		float *	g,
		float *	b,
		float *	a ) const

inline

Definition at line 122 of file mlSkeleton.h.

◆ getRGBA() [2/2]

float * Skeleton::getRGBA ( void )

inline

Definition at line 129 of file mlSkeleton.h.

◆ getVoxelNum()

size_t Skeleton::getVoxelNum ( ) const

inline

Definition at line 77 of file mlSkeleton.h.

References getVoxelNum().

Referenced by getVoxelNum().

◆ ML_SET_ADDSTATE_VERSION()

Skeleton::ML_SET_ADDSTATE_VERSION ( 5 )

Set current addStateToTree() version number:

◆ numVesselPos()

size_t Skeleton::numVesselPos ( ) const

inline

Definition at line 78 of file mlSkeleton.h.

◆ operator!=()

bool Skeleton::operator!= ( const Skeleton & other ) const

inline

Definition at line 51 of file mlSkeleton.h.

References Skeleton().

◆ operator=()

Skeleton & Skeleton::operator= ( const Skeleton & other )

References Skeleton().

◆ operator==()

bool Skeleton::operator== ( const Skeleton & other ) const

References Skeleton().

◆ readStateFromTree()

void Skeleton::readStateFromTree ( TreeNode * parent )

override

Reads the object state from the children of the given parent node.

◆ setCopyVesselVoxels()

void Skeleton::setCopyVesselVoxels ( bool flag )

inlinestatic

Set global parameter for skeleton copy.

Definition at line 142 of file mlSkeleton.h.

◆ setCopyVesselVoxelsDefault()

void Skeleton::setCopyVesselVoxelsDefault ( void )

inlinestatic

Definition at line 143 of file mlSkeleton.h.

◆ setRGBA() [1/2]

void Skeleton::setRGBA ( float * rgba )

inline

Definition at line 118 of file mlSkeleton.h.

◆ setRGBA() [2/2]

void Skeleton::setRGBA	(	float	r,
		float	g,
		float	b,
		float	a )

inline

Definition at line 111 of file mlSkeleton.h.

◆ STATIC_CASTED_GRAPH_PROPERTY()

Skeleton::STATIC_CASTED_GRAPH_PROPERTY	(	LABELTYPE	,
		MLuint64	,
		labelType	,
		LabelType	)

decide whether label is a trace color or continuous gray value.

◆ STATIC_GRAPH_PROPERTY() [1/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	double	,
		area	,
		Area	)

◆ STATIC_GRAPH_PROPERTY() [2/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	double	,
		distanceLabel	,
		DistanceLabel	)

◆ STATIC_GRAPH_PROPERTY() [3/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	double	,
		freeLabel	,
		FreeLabel	)

◆ STATIC_GRAPH_PROPERTY() [4/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	double	,
		label	,
		Label	)

◆ STATIC_GRAPH_PROPERTY() [5/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	double	,
		minDistance	,
		MinDistance	)

References STATIC_GRAPH_PROPERTY().

Referenced by STATIC_GRAPH_PROPERTY().

◆ STATIC_GRAPH_PROPERTY() [6/6]

Skeleton::STATIC_GRAPH_PROPERTY	(	MLuint64	,
		enumLabel	,
		EnumLabel	)

label to enumerate the skeleton within a graph. not enumerated value is 0. not persistent.

◆ transform()

void Skeleton::transform ( const Matrix4 & m )

Apply a 4x4 homogeneous transformation matrix to the skeleton position.

References transform().

Referenced by transform().

◆ vesselPos() [1/2]

Vector3 & Skeleton::vesselPos ( size_t index )

inline

Definition at line 82 of file mlSkeleton.h.

◆ vesselPos() [2/2]

const Vector3 & Skeleton::vesselPos ( size_t index ) const

inline

Definition at line 81 of file mlSkeleton.h.

◆ vesselVoxelPos()

ImageVector Skeleton::vesselVoxelPos ( size_t index )

◆ voxelPos()

ImageVector Skeleton::voxelPos ( )

Make it easer to access world-position as class ImageVector (int) position, if positions are in fact in voxel-coordinates.

References voxelPos().

Referenced by voxelPos().

◆ Graph

friend class Graph

friend

Definition at line 36 of file mlSkeleton.h.

References Graph.

Referenced by Graph.

◆ VesselEdge

friend class VesselEdge

friend

Definition at line 37 of file mlSkeleton.h.

References VesselEdge.

Referenced by VesselEdge.

The documentation for this class was generated from the following file:

MeVisLab/Standard/Sources/Shared/MLVesselGraph/mlSkeleton.h

Public Types

Public Member Functions

Static Public Member Functions

Friends

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ LABELTYPE

Constructor & Destructor Documentation

◆ Skeleton() [1/2]

◆ Skeleton() [2/2]

Member Function Documentation

◆ addStateToTree()

◆ addVesselPos() [1/2]

◆ addVesselPos() [2/2]

◆ clearVesselPos()

◆ convertToVoxel()

◆ convertToWorld()

◆ copyProperties()

◆ getRGBA() [1/2]

◆ getRGBA() [2/2]

◆ getVoxelNum()

◆ ML_SET_ADDSTATE_VERSION()

◆ numVesselPos()

◆ operator!=()

◆ operator=()

◆ operator==()

◆ readStateFromTree()

◆ setCopyVesselVoxels()

◆ setCopyVesselVoxelsDefault()

◆ setRGBA() [1/2]

◆ setRGBA() [2/2]

◆ STATIC_CASTED_GRAPH_PROPERTY()

◆ STATIC_GRAPH_PROPERTY() [1/6]

◆ STATIC_GRAPH_PROPERTY() [2/6]

◆ STATIC_GRAPH_PROPERTY() [3/6]

◆ STATIC_GRAPH_PROPERTY() [4/6]

◆ STATIC_GRAPH_PROPERTY() [5/6]

◆ STATIC_GRAPH_PROPERTY() [6/6]

◆ transform()

◆ vesselPos() [1/2]

◆ vesselPos() [2/2]

◆ vesselVoxelPos()

◆ voxelPos()

Friends And Related Symbol Documentation

◆ Graph

◆ VesselEdge