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MeVisLab Toolbox Reference
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#include <mlKernelModule.h>
Public Member Functions | |
| KernelModule (int inputNum=1, int outputNum=1) | |
Fields to specify kernel geometry. See \c _createKernelExtentFields() which creates these fields. If not called then NULL is returned otherwise. | |
| IntField * | getKernelXFld () const |
| X extent of kernel. The field name will be "kernelX". Field default is 3 if created. | |
| IntField * | getKernelYFld () const |
| Y extent of kernel. The field name will be "kernelY". Field default is 3 if created. | |
| IntField * | getKernelZFld () const |
| Z extent of kernel. The field name will be "kernelZ". Field default is 1 if created. | |
| IntField * | getKernelCFld () const |
| C extent of kernel. The field name will be "kernelC". Field default is 1 if created. | |
| IntField * | getKernelTFld () const |
| T extent of kernel. The field name will be "kernelT". Field default is 1 if created. | |
| IntField * | getKernelUFld () const |
| U extent of kernel. The field name will be "kernelU". Field default is 1 if created. | |
| BoolField * | getMakeSphericalFld () const |
Read only information fields. | |
| StringField * | getKernelInfoFld () const |
| DoubleField * | getKernelElementsSumFld () const |
| IntField * | getNumKernelElementsFld () const |
| Public Member Functions inherited from ml::KernelBaseModule | |
| Kernel & | getKernel () |
| const Kernel & | getConstKernel () const |
Method to access the kernel as constant object. See also getKernel(). | |
| EnumField * | getBorderHandlingFld () const |
| DoubleField * | getFillValueFld () const |
| EnumField & | getReferenceExtentModeFld () const |
| Public Member Functions inherited from ml::Module | |
| MLMetaProfilePtr & | getMetaProfile () const |
| Returns the metaprofile for the base operator. | |
| const char * | getTypeNameFast () const |
| Module (int numInputImages, int numOutputImages) | |
| ~Module () override | |
| InputConnectorField * | getInputImageField (MLint i) const |
Returns the field representing input image i. i must be a valid index. | |
| OutputConnectorField * | getOutputImageField (MLint i=0) const |
Returns the field representing output image i. i must be a valid index. | |
| MLint | getNumInputImages () const |
| Returns the number of input images of this module. | |
| MLint | getNumOutputImages () const |
| Returns the number of output images of this module. | |
| PagedImage * | getOutputImage (MLint outputIndex=0) const |
Returns the output image outputIndex. The index needs to be in the range [0, getNumOutputImages()-1]. | |
| InputConnectorField * | addInputImage (const char *name=nullptr) |
| OutputConnectorField * | addOutputImage (const char *name=nullptr) |
| PagedImage * | getInputImage (MLint inputIndex, bool getReal=false) const |
| PagedImage * | getUpdatedInputImage (MLint inputIndex, bool getReal=false) const |
| MLErrorCode | processAllPages (int outputIndex=-1, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
| MLErrorCode | processAllPages (ProcessAllPagesHandler &handler, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
| MLErrorCode | processMissingPages (int outputIndex=0, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
| void | clearOutputImage (MLint i=0) |
Clears cached output image pages of output image i. | |
| MLint | getOutputImageInplace (MLint outputIndex=0) const |
| MLint | getBypass (MLint outputIndex=0) const |
| THREAD_SUPPORT | getThreadSupport () const |
| bool | areRecursiveHandleNotificationsPermitted () const |
| MLint | getHandleNotificationEntryCounter () const |
| PERMITTED_TYPES | getVoxelDataTypeSupport () const |
| bool | isSupportedVoxelDataType (MLDataType dt) const |
| virtual INPUT_HANDLE | handleInput (int, INPUT_STATE) const |
| INPUT_STATE | getInputState (MLint index) |
| INPUT_STATE | getUpdatedInputState (MLint index) |
| bool | isInputImageField (Field *field) const |
| void | touchOutputImageFields () const |
| Touches all output image fields to indicate that the images have changed. | |
| virtual void | beginSaveFields () |
| virtual void | endSaveFields () |
| Public Member Functions inherited from ml::FieldContainer | |
| FieldContainer () | |
| Constructor. | |
| ~FieldContainer () override | |
| Destructor: Deletes all added fields. | |
| std::string | whoAmI (bool withInstanceName=true) const |
| Field * | addField (const char *name, const char *type, const char *value) |
| Field * | addField (Field *field) |
Adds a field, the ownership of the field is passed to the FieldContainer. | |
| BoolField * | addBool (const char *name) |
Creates a BoolField with name and adds it to the container. Default value is false. | |
| BoolField * | addBool (const char *name, bool value) |
Creates a BoolField with name and adds it to the container. | |
| IntField * | addInt (const char *name) |
Creates an IntField with name and adds it to the container. Default value is 0. | |
| IntField * | addInt (const char *name, MLint value) |
Creates an IntField with name and adds it to the container. | |
| EnumField * | addEnum (const char *name, const char *const *enumerationItemNames, MLint numEnumerationItems) |
| EnumField * | addEnum (const char *name, const std::vector< std::string > &enumerationItemNames) |
| template<typename EnumType> | |
| TypedEnumField< EnumType > * | addEnum (const char *name, const EnumValues< EnumType > &values, EnumType initialValue) |
| FloatField * | addFloat (const char *name) |
Creates a FloatField with name and adds it to the container. Default value is 0.f. | |
| FloatField * | addFloat (const char *name, float value) |
Creates a FloatField with name and adds it to the container. | |
| ProgressField * | addProgress (const char *name) |
Creates a float ProgressField with name and adds it to the container. Default value is 0.f. | |
| ProgressField * | addProgress (const char *name, float value) |
Creates a float ProgressField with name and adds it to the container. | |
| DoubleField * | addDouble (const char *name) |
Creates a DoubleField with name and adds it to the container. Default value is 0. | |
| DoubleField * | addDouble (const char *name, double value) |
Creates a DoubleField with name and adds it to the container. | |
| StringField * | addString (const char *name) |
Creates a StringField with name and adds it to the container. Default value is empty string. | |
| StringField * | addString (const char *name, const std::string &value) |
Creates a StringField with name and adds it to the container. | |
| NotifyField * | addNotify (const char *name) |
Creates a NotifyField field with name and adds it to the container. | |
| TriggerField * | addTrigger (const char *name) |
| BaseField * | addBase (const char *name) |
Creates a Base field with name and adds it to the container. Default value is NULL. | |
| BaseField * | addBase (const char *name, Base *value) |
Creates a Base field with name and adds it to the container. | |
| BaseField * | addBase (const char *name, const RefCountedBasePtr &value) |
Creates a Base field with name and adds it to the container. Sets the value from intrusive pointer. | |
| template<typename T> | |
| BaseField * | addBaseWithAllowedType (const char *name, T *value=nullptr) |
| As above, but also sets the allowed type of the field. | |
| template<typename T> | |
| BaseField * | addBaseWithAllowedType (const char *name, const ::boost::intrusive_ptr< T > &value) |
| As above, but also sets the allowed type of the field. | |
| template<typename T> | |
| TypedBaseField< T > * | addTypedBase (const char *name) |
Creates a TypedBaseField with name and adds it to the container. Default value is NULL. | |
| template<typename T> | |
| TypedBaseField< T > * | addTypedBase (const char *name, T *value) |
Creates a TypedBaseField with name and adds it to the container. | |
| template<typename T> | |
| TypedBaseField< T > * | addTypedBase (const char *name, const ::boost::intrusive_ptr< T > &value) |
Creates a TypedBaseField with name and adds it to the container. Sets the value from intrusive pointer. | |
| SoNodeField * | addSoNode (const char *name) |
Creates a SoNodeField with name and adds it to the container. Default value is NULL. | |
| SoNodeField * | addSoNode (const char *name, SoNode *value) |
Creates a SoNodeField with name and adds it to the container. | |
| PointerField * | addPointer (const char *name) |
Creates a PointerField with name and adds it to the container. | |
| Vector2Field * | addVector2 (const char *name) |
Creates a Vector2Field with name and adds it to the container. | |
| Vector2Field * | addVector2 (const char *name, const Vector2 &value) |
Creates a Vector2Field with name and adds it to the container. | |
| Vector2Field * | addVector2 (const char *name, double x, double y) |
Creates a Vector2Field with name and adds it to the container. | |
| Vector3Field * | addVector3 (const char *name) |
Creates a Vector3Field with name and adds it to the container. | |
| Vector3Field * | addVector3 (const char *name, const Vector3 &value) |
Creates a Vector3Field with name and adds it to the container. | |
| Vector3Field * | addVector3 (const char *name, double x, double y, double z) |
Creates a Vector3Field with name and adds it to the container. | |
| Vector4Field * | addVector4 (const char *name) |
Creates a Vector4Field with name and adds it to the container. | |
| Vector4Field * | addVector4 (const char *name, const Vector4 &value) |
Creates a Vector4Field with name and adds it to the container. | |
| Vector4Field * | addVector4 (const char *name, double x, double y, double z, double w) |
Creates a Vector4Field with name and adds it to the container. | |
| Vector5Field * | addVector5 (const char *name) |
Creates a Vector5Field with name and adds it to the container. | |
| Vector5Field * | addVector5 (const char *name, const Vector5 &value) |
Creates a Vector5Field with name and adds it to the container. | |
| Vector6Field * | addVector6 (const char *name) |
Creates a Vector6Field with name and adds it to the container. | |
| Vector6Field * | addVector6 (const char *name, const Vector6 &value) |
Creates a Vector6Field with name and adds it to the container. | |
| Vector10Field * | addVector10 (const char *name) |
Creates a Vector10Field with name and adds it to the container. | |
| Vector10Field * | addVector10 (const char *name, const Vector10 &value) |
Creates a Vector10Field with name and adds it to the container. | |
| ImageVectorField * | addImageVector (const char *name) |
Creates a ImageVectorField with name and adds it to the container. | |
| ImageVectorField * | addImageVector (const char *name, const ImageVector &value) |
Creates a ImageVectorField with name and adds it to the container. | |
| ImageVectorField * | addImageVector (const char *name, MLint x, MLint y, MLint z, MLint c, MLint t, MLint u) |
Creates a ImageVectorField with name and adds it to the container. | |
| SubImageBoxField * | addSubImageBox (const char *name) |
Creates a SubImageBoxField with name and adds it to the container. | |
| SubImageBoxField * | addSubImageBox (const char *name, const SubImageBox &value) |
Creates a SubImageBoxField with name and adds it to the container. | |
| SubImageBoxdField * | addSubImageBoxd (const char *name) |
Creates a SubImageBoxd field with name and adds it to the container. | |
| SubImageBoxdField * | addSubImageBoxd (const char *name, const SubImageBoxd &value) |
Creates a SubImageBoxd field with name and adds it to the container. | |
| ColorField * | addColor (const char *name) |
Creates a ColorField with name and adds it to the container. | |
| ColorField * | addColor (const char *name, float r, float g, float b) |
Creates a ColorField with name and adds it to the container. | |
| ColorField * | addColor (const char *name, const Vector3 &value) |
Creates a ColorField with name and adds it to the container. | |
| PlaneField * | addPlane (const char *name) |
Creates a PlaneField with name and adds it to the container. | |
| PlaneField * | addPlane (const char *name, double f0, double f1, double f2, double f3) |
Creates a PlaneField with name and adds it to the container. | |
| PlaneField * | addPlane (const char *name, const Plane &value) |
Creates a PlaneField with name and adds it to the container. | |
| RotationField * | addRotation (const char *name) |
Creates a RotationField with name and adds it to the container. | |
| RotationField * | addRotation (const char *name, const Rotation &value) |
Creates a RotationField with name and adds it to the container. | |
| Matrix2Field * | addMatrix2 (const char *name) |
Creates a Matrix2Field with name and adds it to the container. | |
| Matrix2Field * | addMatrix2 (const char *name, const Matrix2 &value) |
Creates a Matrix2Field with name and adds it to the container. | |
| Matrix3Field * | addMatrix3 (const char *name) |
Creates a Matrix3Field with name and adds it to the container. | |
| Matrix3Field * | addMatrix3 (const char *name, const Matrix3 &value) |
Creates a Matrix3Field with name and adds it to the container. | |
| Matrix4Field * | addMatrix4 (const char *name) |
Creates a Matrix4Field with name and adds it to the container. | |
| Matrix4Field * | addMatrix4 (const char *name, const Matrix4 &value) |
Creates a Matrix4Field with name and adds it to the container. | |
| Matrix5Field * | addMatrix5 (const char *name) |
Creates a Matrix5Field with name and adds it to the container. | |
| Matrix5Field * | addMatrix5 (const char *name, const Matrix5 &value) |
Creates a Matrix5Field with name and adds it to the container. | |
| Matrix6Field * | addMatrix6 (const char *name) |
Creates a Matrix6Field with name and adds it to the container. | |
| Matrix6Field * | addMatrix6 (const char *name, const Matrix6 &value) |
Creates a Matrix6Field with name and adds it to the container. | |
| MatrixField * | addMatrix (const char *name) |
Creates a MatrixField with name and adds it to the container. | |
| MatrixField * | addMatrix (const char *name, const Matrix4 &value) |
Creates a MatrixField with name and adds it to the container. | |
| MLDataTypeField * | addMLDataType (const char *name) |
Creates a MTDataTypeField with name and adds it to the container. | |
| MLDataTypeField * | addMLDataType (const char *name, MLDataType value) |
Creates a MTDataTypeField with name and adds it to the container. | |
| UniversalTypeField * | addUniversalType (const char *name) |
Creates an UniversalTypeField field with name and adds it to the container. | |
| IntListField * | addIntList (const char *name) |
Creates an IntListField field with name and empty list value and adds it to the container. | |
| IntListField * | addIntList (const char *name, const std::vector< MLint > &value) |
Creates an IntListField field with name and given list value and adds it to the container. | |
| DoubleListField * | addDoubleList (const char *name) |
Creates an DoubleListField field with name and empty list value and adds it to the container. | |
| DoubleListField * | addDoubleList (const char *name, const std::vector< double > &value) |
Creates an DoubleListField field with name and given list value and adds it to the container. | |
| Vector2ListField * | addVector2List (const char *name) |
Creates an Vector2ListField field with name and empty list value and adds it to the container. | |
| Vector2ListField * | addVector2List (const char *name, const std::vector< Vector2 > &value) |
Creates an Vector2ListField field with name and given list value and adds it to the container. | |
| Vector3ListField * | addVector3List (const char *name) |
Creates an Vector3ListField field with name and empty list value and adds it to the container. | |
| Vector3ListField * | addVector3List (const char *name, const std::vector< Vector3 > &value) |
Creates an Vector3ListField field with name and given list value and adds it to the container. | |
| Vector4ListField * | addVector4List (const char *name) |
Creates an Vector4ListField field with name and empty list value and adds it to the container. | |
| Vector4ListField * | addVector4List (const char *name, const std::vector< Vector4 > &value) |
Creates an Vector4ListField field with name and given list value and adds it to the container. | |
| size_t | getNumFields () const |
| Returns the number of added fields. | |
| bool | hasField (const std::string &name) const |
Returns true if the field with name name exists; otherwise, false is returned. | |
| Field * | getField (const std::string &name) const |
| Field * | getField (MLint index) const |
Returns pointer of field at index if it exists. If not, -1 is returned. | |
| MLint | getFieldIndex (Field *field) const |
Returns index of field if it exists. If not, -1 is returned. | |
| void | setFieldStringValue (const std::string &name, const std::string &value) |
| std::string | getFieldStringValue (const std::string &name) const |
| virtual void | deactivateAttachments () |
| Public Member Functions inherited from ml::Base | |
| Base () | |
| Constructor. | |
| virtual | ~Base () |
| Destructor. | |
| virtual Base * | deepCopy () const |
| bool | isOfAllowedType (const std::vector< const RuntimeType * > &types) const |
| virtual bool | isRefCountedBase () const |
| Returns whether the instance is derived from RefCountedBase. | |
| virtual std::string | detailString () const |
| virtual bool | implementsPersistence (PersistenceInterface) const |
| virtual std::string | persistentState () const |
| Returns a string describing the object's internal state. | |
| virtual void | setPersistentState (const std::string &state) |
| virtual void | addStateToTree (TreeNode *) const |
| Attaches the object state as children of the given parent node. | |
| virtual void | readStateFromTree (TreeNode *) |
| Reads the object state from the children of the given parent node. | |
| virtual void | writeTo (AbstractPersistenceOutputStream *) const |
| virtual void | readFrom (AbstractPersistenceInputStream *, int) |
Protected Member Functions | |
Update or modification for the kernel. | |
| virtual void | _userKernelPreUpdate () |
| virtual void | _userKernelPostUpdate () |
Convenience routines to create kernel control and information fields. | |
| virtual void | _createKernelExtentFields (int numDim=6, const ImageVector &defaultExt=ImageVector(3, 3, 1, 1, 1, 1)) |
| virtual void | _validateKernelExtents () |
| virtual void | _createMakeSphericalField (bool defaultVal=false) |
| virtual void | _createNormalizeField (bool defaultVal=false) |
| virtual void | _createMinMaxCalcFields (bool defaultValue=false, bool createSetOutputMinMax=false) |
| virtual void | _createMinMaxFields (MLdouble minVal=0, MLdouble maxVal=0, bool defaultValue=false) |
| virtual void | _createExternalKernelFields (bool createUseToggle=false, bool defaultVal=false) |
| virtual void | _createKernelOutputField () |
| virtual void | _createImageIntervalFields (MLdouble min=0, MLdouble max=1024, bool createToggle=false, bool useIt=false) |
| virtual void | _createKernelIntervalFields (MLdouble min=0, MLdouble max=1024, bool createToggle=false, bool useIt=false) |
| virtual void | _createKernelInfoField () |
| virtual void | _createNumKernelElementsField () |
| virtual void | _createKernelElementsSumField () |
Kernel and output field updates. | |
| virtual void | _updateKernel () |
| virtual void | _updateKernel (bool permitExtentChanges) |
| virtual void | _updateKernelOutputField () |
| virtual std::string | _composeKernelInfo (bool valid=true) const |
Interval testing and initialization. | |
| void | _setImageInterval (MLdouble minVal=-DBL_MAX, MLdouble maxVal=DBL_MAX) |
| void | _setKernelInterval (MLdouble minVal=-DBL_MAX, MLdouble maxVal=DBL_MAX) |
| bool | _isInImageInterval (MLdouble v) const |
| bool | _isInKernelInterval (MLdouble v) const |
Inherited and extended methods overloaded from \c KernelBaseModule. | |
| void | handleNotification (Field *field) override |
| void | activateAttachments () override |
| void | calculateOutputImageProperties (int outputIndex, PagedImage *outputImage) override |
| void | calcOutSubImagePostProcessing (SubImage *outSubImg, int outIndex, SubImage *inSubImgs) override |
| Protected Member Functions inherited from ml::KernelBaseModule | |
| KernelBaseModule (int inputNum=1, int outputNum=1) | |
| virtual void | _setCorrectCorrelationMinMax (bool imageIntervalUsed=false, MLdouble intervalMin=0, MLdouble intervalMax=0, MLint inIdx=0, MLint outIdx=0) |
| virtual ImageVector | _getCalculatedReferenceInputExt () const |
| virtual void | _calcKernelPage (SubImage *outSubImg, int outIndex, SubImage *inSubImgs, int numInSubImgs, MLsoffset *indexTab, size_t indexTabSize, MLsoffset srcVoxelOffset, size_t loopIdx, size_t iteration, const ImageVector &ov1, const ImageVector &ov2, const ImageVector &pOf, size_t numVox)=0 |
| number of voxels in row to be processed. | |
| SubImageBox | calculateInputSubImageBox (int inIndex, const SubImageBox &outSubImgBox, int outIndex) override |
| virtual void | calcInSubImagePreparation (int outIndex, SubImage *inSubImgs) |
| virtual SubImageBox | calculateAreaToBeCalculated (const SubImageBox &areaToBeCalculated, const SubImageBox &outSubImageBox) |
| virtual ImageVector | calculateOutInCoordShift (const ImageVector shift, const SubImageBox &outSubImageBox) |
| virtual SubImageBox | calculateValidDestArea (const SubImageBox &validDestArea, const SubImageBox &outSubImageBox) |
| virtual void | _connectToAllOutputs (Field *field) |
| Protected Member Functions inherited from ml::Module | |
| void | handleNotificationInternal (Field *field, FieldSensor::Strength strength) override |
| virtual void | provideCustomPage (int, const SubImageBox &, MLMemoryBlockHandle &) |
| void | handleNotificationOff () |
| void | handleNotificationOn () |
| bool | isHandleNotificationOn () |
Returns true if handleNotification calls are permitted; otherwise, it returns false. | |
| void | setOutputImageInplace (MLint outputIndex=0, MLint inputIndex=0) |
| void | unsetOutputImageInplace (MLint outputIndex=0) |
| void | setBypass (MLint outputIndex=0, MLint inputIndex=0) |
| void | setClampPagesToImageExtent (bool flag=true) |
| void | setThreadSupport (THREAD_SUPPORT supportMode) |
| void | permitRecursiveHandleNotifications (bool enable) |
| void | setVoxelDataTypeSupport (PERMITTED_TYPES permTypes) |
Field to normalize kernel after geometry changes. | |
| BoolField * | getNormalizeFld () const |
Fields for kernel input and output connections. Created only on demand, NULL otherwise. | |
| StringField * | getExternalKernelFld () const |
| BoolField * | getUseExternalKernelFld () const |
| StringField * | getKernelOutputFld () const |
Fields for an image interval. Created only on demand, NULL otherwise. | |
| DoubleField * | getImageIntervalMinFld () const |
| DoubleField * | getImageIntervalMaxFld () const |
| BoolField * | getUseImageIntervalFld () const |
Field for a kernel interval. Created only on demand, NULL otherwise. | |
| DoubleField * | getKernelIntervalMinFld () const |
| DoubleField * | getKernelIntervalMaxFld () const |
| BoolField * | getUseKernelIntervalFld () const |
Automatic min/max calculation for output image. Created only on demand, NULL otherwise. | |
| BoolField * | getAutoCalcMinMaxFld () const |
| NotifyField * | getSetAutoMinMaxFld () const |
Minimum/Maximum setting for output image. | |
| DoubleField * | getOutputMinFld () const |
| DoubleField * | getOutputMaxFld () const |
| BoolField * | getUseMinMaxFld () const |
Additional Inherited Members | |
| Public Types inherited from ml::KernelBaseModule | |
| enum | InputImageRefExtent { Overlap = 0 , Input0_ExtWithoutFill , Input0_ExtWithFill , MaxExtentsWithoutFill , MaxExtentsWithFill , NumImageRefExtents } |
| Public Types inherited from ml::Module | |
| enum | PERMITTED_TYPES { ONLY_SCALAR_TYPES , ONLY_DEFAULT_TYPES , ALL_REGISTERED_TYPES } |
| See documentation of setVoxelDataTypeSupport. More... | |
| enum | INPUT_STATE { DISCONNECTED = 0 , CONNECTED_BUT_INVALID = 1 , CONNECTED_AND_VALID = 2 , CONNECTED_BUT_NEEDS_UPDATE = 3 } |
| See documentation of handleInput. More... | |
| enum | INPUT_HANDLE { INVALIDATE = 0 , ALLOW_INVALID_INPUT = 2 } |
| See documentation of handleInput. More... | |
| Public Types inherited from ml::Base | |
| enum | PersistenceInterface { PersistenceByString , PersistenceByTreeNode , PersistenceByStream } |
| This enum describes the different persistence interfaces available. More... | |
| Static Public Member Functions inherited from ml::Module | |
| static MLErrorCode | getTile (PagedImage *image, SubImageBox loc, MLDataType datatype, void **data, const ScaleShiftData &scaleShiftData=ScaleShiftData(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
| static MLErrorCode | getTile (PagedImage *image, SubImage &subimg, const ScaleShiftData &scaleShiftData=ScaleShiftData(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
| static MLErrorCode | updateImageProperties (PagedImage *image) |
| static void | freeTile (void *data) |
| For documentation see Host::freeTile(). | |
| static void | updateProgress (const char *info1, const char *info2) |
| For documentation see Host::updateProgress(). | |
| static bool | shouldTerminate () |
| For documentation see Host::shouldTerminate(). | |
| static Field * | getPressedNotifyField () |
| For documentation see Host::getPressedNotifyField(). | |
| static void | adaptPageExtent (ImageVector &pageExtent, MLDataType imageType, const ImageVector &newImgExtent, const ImageVector &oldImgExtent, const ImageVector &pageUnit=ImageVector(0), const ImageVector &minPageExtent=ImageVector(0), const ImageVector &maxPageExtent=ImageVector(0)) |
| static std::string | getVoxelValueAsString (PagedImage *image, const ImageVector &position, MLErrorCode *errorCode=nullptr, const std::string &errorResult="") |
| static size_t | getNumModules () |
| Returns the number of instantiated modules. | |
| static Module * | getModule (size_t index) |
Returns a pointer to instantiated module index. | |
| static MLint | findModuleIndex (Module &module) |
Returns the index of Module module. If not found, -1 is returned. | |
| static void | destroyModule () |
| Protected Types inherited from ml::Module | |
| enum | THREAD_SUPPORT { NO_THREAD_SUPPORT = PagedImage::NO_THREAD_SUPPORT , MULTITHREADED = PagedImage::MULTITHREADED , IO_THREAD = PagedImage::IO_THREAD } |
The typically used convenience class to apply a kernel to an image. Many convenience methods are available to configure the module with certain fields combinations so that derived modules don't need to implement most inputs for kernel extents, fill value, kernel input and output connectors, image and kernel intervals etc.
Definition at line 37 of file mlKernelModule.h.
| ml::KernelModule::KernelModule | ( | int | inputNum = 1, |
| int | outputNum = 1 ) |
Constructor. Initializes the fields, the members and the field connections with the field container. Default configuration is with one input and one output if no arguments are passed.
Referenced by calcOutSubImagePostProcessing().
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protectedvirtual |
Create a string containing all important kernel information. If false is passed then an invalid message is added.
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Creates a kernel input field and an information field. The information field contains a message showing whether the kernel in the input is valid or not. If _createUseToggle is true then the field _useExternalKernelFld is created and initialized to defaultVal (false if not passed differently). The default value of the kernel input is an empty string, i.e. an undefined kernel. The information string field is set to "Invalid" The _useExternalKernelFld and _externalKernelFld are attached to field of output 0 so that changes will notify the output image immediately. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates two limit fields to specify an interval and - if createToggle is passed as true - a toggle to enable/disable interval usage. The default values are 0 for the minimum and 1024 for the maximum field if not specified differently. The used field names will be "intervalMinOfFilteredVoxels", "intervalMaxOfFilteredVoxels" and "useIntervalOfFilteredVoxels", the member names _imageIntervalMin, _imageIntervalMax and _useImageInterval. The fields are attached to the field of output 0 so that changes will notify the output image immediately. This interval is usually used to select those voxels which are filtered voxel values not in the interval are bypassed unchanged. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates an information field which will contain the sum of all kernel elements. The created field is only intended as a read-only field users. The field name will be "kernelElementsSum" and the field default results from the created default kernel. This field is especially useful to connect from when sum of kernel elements is needed elsewhere. handleNotification is not called on creation or initialization process.
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Creates the fields _kernelXFld, ... _kernelUFld and initializes them with the values 3,3,1,1,1,1 if not passed differently to defaultExt. If numDim is passed as a value < 6 then only numDim fields are created, e.g. _kernelXFld and _kernelYFld are created if numDim is 2. The field names will be "kernelX", ... , "kernelU", respectively. The fields are attached to the field of output 0 so that changes will notify the output image immediately. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates an information field about the current kernel and its creation process. The default value is "Invalid". handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates two limit fields to specify an interval and - if createToggle is passed as true - a toggle to enable/disable interval usage. The default values are 0 for the minimum and 1024 for the maximum field if not specified differently. The used field names will be "intervalMinOfVoxelsForFiltering", "kernelIintervalMaxOfVoxelsForFiltering" and "useIntervalOfVoxelsForFiltering", the member names _kernelIntervalMinFld, _kernelIntervalMaxFld and _useKernelIntervalFld. The fields are attached to the field of output 0 so that changes will notify the output image immediately. These fields are used to specify a selection interval for the values of voxels under kernel elements to be used in a kernel operation. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates a kernel output field. It will be set to the current kernel if _updateKernelOutputField() is called. The default value of the kernel input is an empty string, i.e. an undefined kernel. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates a bool field which enables/disables the usage of a connected kernel. Default value will be false(=off) if not passed differently as defaultVal. See also _makeSphericalFld. The field name will be "makeSpherical". The field is attached to the field of output 0 so that changes will notify the output image immediately. handleNotification is not called on creation or initialization process. To be called only once in the constructor, more calls will generate warnings.
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Creates a toggle field which enables the scan of calculated output pages for min/max values if enabled. This is useful since many kernel operations have unpredictable results - so the minimum and maximum values of the output image is difficult to foresee. The protected members _autoMin autoMax are updated and _autoMinMaxValid indicates whether these members are valid. The field name will be "autoCalcMinMax". The default value is false=off if not specified differently as defaultVal.
In combination with the fields _outputMinFld and _outputMaxFld it might be useful to have an assignment button to transfer _autoMin and _autoMax to them. Pass _createSetOutputMinMax as true. Then such a button is created with the name "setOutputMinMax". See also _createOutputMinMaxFields. The toggle field is attached to the field of output 0 so that changes will notify the output image immediately. The button will not be attached to the output image since the _outputMinFld and _outputMaxFld usually will be. To be called only once in the constructor, more calls will generate warnings.
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Creates a minimum and a maximum field containing minimum/maximum values for the output image. This is useful since many kernel operations have unpredictable results - so the minimum and maximum values of the output image is difficult to foresee. The field names will be "outputMin" and "outputMax". The default values are 0 and 0 if not specified differently. See also _outputMinFld and _outputMaxFld. Also an enable/disable button is created which enables/disables the usage of those min/max fields. It field name will be "useMinMax". Its default value is false if not specified differently by defaultValue. All fields are attached to the field of output 0 so that changes will notify the output image immediately. To be called only once in the constructor, more calls will generate warnings.
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Creates a bool field which enables/disables the automatic normalization of the kernel after each change. Default value will be false(=off) if not passed differently as defaultVal. The field name will be "autoNormalize". See also _normalizeFld. handleNotification is not called on creation or initialization process. The field is attached to the field of output 0 so that changes will notify the output image immediately. To be called only once in the constructor, more calls will generate warnings.
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Creates an information field which will contain the number of kernel elements. The created field is only intended as a read-only field users. The field name will be "numKernelElements" and the field default results from the created default kernel. This field is especially useful to connect from when the number of kernel elements is needed elsewhere. handleNotification is not called on creation or initialization process.
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Test whether the value v is within image interval. Note that the interval is considered exclusively if maximum is smaller than minimum, i.e. all values between maximum and minimum are excluded and all others are included. Intervals where minVal == maxVal are considered as a normal interval.
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Test whether the value v is within kernel interval. Note that the interval is considered exclusively if maximum is smaller than minimum, i.e. all values between maximum and minimum are excluded and all others are included. Intervals where minVal == maxVal are considered as a normal interval.
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Update private test members for fast image interval testings. Filtering can be applied to a subset of voxels by setting a threshold interval which includes the convoluted voxels. If used then only voxels >= min and <=max are modified by filtering. Default is (-DBL_MAX, DBL_MAX).
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Update private test members for fast kernel testings. When filtering an image then voxels covered by kernel elements outside a certain grey level interval can be excluded. If used then only voxels >= min and <=max are multiplied with kernel values. Otherwise these products are not added to the resulting output image voxel. Default is (-DBL_MAX, DBL_MAX).
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Convenience routine to call the typically used _updateKernel() functionality, e.g. at the end of constructors or in handleNotification(). Normally it is not intended to be overloaded.
Definition at line 437 of file mlKernelModule.h.
References _updateKernel().
Referenced by _updateKernel().
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This is the method to update the kernel, it should be called if the kernel requires an update, e.g. in handleNotification and dependent field updates shall take place. Normally it is not intended to be overloaded. The following operations are performed:
_updateKernel() to supply a method where the application can change the kernel BEFORE the kernel input is checked or kernel extents are set. See _updateKernel(permitExtentChanges) for more Infos.permitExtentChanges is true then the kernel is set to the input state. If an invalid kernel is connected a 1x1x1x1x1x1 kernel is set. A not created _useExternalKernelFld is always considered as an enabled kernel input. On no kernel input or if it's disabled the current kernel is not modified.permitExtentChanges is true then a kernel is created from the specified kernel extents. If kernel extent fields are not defined then the kernel is left unchanged._normalizeFld is defined and enabled the kernel is normalized. Otherwise the kernel is left unchanged._userKernelPostUpdate() is called. This method is called by _updateKernel() to supply a method where the application can change the kernel AFTER all automatic changes and BEFORE the output kernel fields, the _kernelInfoFld, the _numKernelElementsFld and the _kernelElementSumFld are updated._kernelElementsSumFld is defined then it's updated. Otherwise it's left unchanged._numKernelElementsFld is defined then it's updated. Otherwise it's left unchanged.
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Updates the kernel output to the value of the kernel if the _kernelOutputFld is defined.
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Typical method to be overloaded by derived modules to apply kernel changes. This method is called by _updateKernel(permitExtentChanges) to supply a method where the application can change the kernel AFTER all automatic changes and BEFORE the output kernel fields, the _kernelInfoFld, the _numKernelElementsFld and the _kernelElementSumFld are updated. See _updateKernel(permitExtentChanges) for more Infos.
Reimplemented in ml::CloseGapFilter, ml::ConvolutionFilter, ml::ExtConvolutionFilter, ml::MorphologyFilter, and ml::SurroundFilter.
Definition at line 258 of file mlKernelModule.h.
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Typical method to be overloaded by derived modules to apply kernel changes. This method is called by _updateKernel(permitExtentChanges) to supply a method where the application can change the kernel BEFORE the kernel input is checked or kernel extents are set. See updateKernel(permitExtentChanges) for more Infos.
Definition at line 248 of file mlKernelModule.h.
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Checks all existing kernel extent fields and corrects all to values >= 0 if necessary.
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Called when field loading or module cloning has finished. It's necessary to update the kernel then to the current state of the fields.
Reimplemented from ml::FieldContainer.
Reimplemented in ml::RankFilter, and ml::SigmaFilter.
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Called to postProcess the output image outSubImg with the index outIndex from the input subimage inImg. It adds calculating of min/max values after filtering. Note that this method should be called in derived classes after page calculation which, however, is usually done automatically by the usage of CALC_ROW macros which filter all rows of a page by calling calcRow. For more information see KernelExample and mlKernelMacros.h. So "overloading by hand" is typically not recommended.
Reimplemented from ml::KernelBaseModule.
References KernelModule().
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Computes the output image properties for output outIndex. This includes adapted min/max values, data type adjustments etc. The world coordinates and the extents of the output image are corrected dependent on the border handling (already done in KernelBaseModule). At last always the data type is checked (and eventually corrected) whether it can manage the currently set minimum and maximum voxel values.
Reimplemented from ml::KernelBaseModule.
Reimplemented in ml::LocalMaximaFilter, ml::MorphologyFilter, ml::RankFilter, ml::RobertsFilter, ml::SigmaFilter, ml::Sobel3DFilter, ml::StdDeviationFilter, ml::SurroundFilter, and ml::ZeroCrossingsFilter.
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A field enabling the automatic minimum/maximum value setting of the output image. This is useful since many kernel operations have unpredictable results - so the minimum and maximum values of the output image is difficult to foresee. After calculation of an image fraction the min/max range is updated since more image values are known. Note that an enabled _autoCalcMinMaxFld causes that calculated output pages are automatically scanned for their minimum and maximum values. The field name will be "autoCalcMinMax". See also _createAutoCalcMinMaxFields() which creates this field. Otherwise NULL is returned. The field default value is false(=off) if created.
Definition at line 200 of file mlKernelModule.h.
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Input connection field for kernels. The field name will be "externalKernel". See also _createExternalKernelFields() which creates this field. Otherwise NULL is returned. Field default is an empty and invalid content if created.
Definition at line 91 of file mlKernelModule.h.
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A field containing the maximum limit of an interval specifying the values of voxels to be filtered. The field name will be "intervalMaxOfFilteredVoxels". See also _createImageIntervalFields() which creates this field. Otherwise NULL is returned. Field default is 1024 if created.
Definition at line 149 of file mlKernelModule.h.
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A field containing the minimum limit of an interval specifying the values of voxels to be filtered. The field name will be "intervalMinOfFilteredVoxels". See also _createImageIntervalFields() which creates this field. Otherwise NULL is returned. Field default is 0 if created.
Definition at line 142 of file mlKernelModule.h.
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C extent of kernel. The field name will be "kernelC". Field default is 1 if created.
Definition at line 58 of file mlKernelModule.h.
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If created this methods returns the pointer to the field containing the sum of all kernel elements, otherwise NULL is returned. See also _createKernelElementsSumField() which creates this field. The field name will be "kernelElementsSum", and the field default results from the created default kernel. This field is especially useful to connect from when sum of kernel elements is needed elsewhere. Note that this field is only intended as a read-only field for users.
Definition at line 123 of file mlKernelModule.h.
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An information string showing the current validity of the kernel input string. See also _createKernelInfoField() which creates this field. Otherwise NULL is returned. Field default is "Invalid" if created.
Definition at line 113 of file mlKernelModule.h.
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A field containing the maximum limit of an interval specifying the values of voxels under kernel elements to be used in a kernel operation. The field name will be "intervalMaxOfVoxelsForFiltering". See also _createKernelIntervalFields() which creates this field. Otherwise NULL is returned. Field default is 1024.
Definition at line 175 of file mlKernelModule.h.
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A field containing the minimum limit of an interval specifying the values of voxels under kernel elements to be used in a kernel operation. The field name will be "intervalMinOfVoxelsForFiltering". See also _createKernelIntervalFields() which creates this field. Otherwise NULL is returned. Field default is 0.
Definition at line 168 of file mlKernelModule.h.
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A field containing the current kernel. So other modules can be connected to get the kernel. The field name will be "kernelOutput". See also _createKerneOutput() which creates this field. Otherwise NULL is returned. Field default is an empty and undefined kernel if created.
Definition at line 104 of file mlKernelModule.h.
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T extent of kernel. The field name will be "kernelT". Field default is 1 if created.
Definition at line 60 of file mlKernelModule.h.
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U extent of kernel. The field name will be "kernelU". Field default is 1 if created.
Definition at line 62 of file mlKernelModule.h.
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X extent of kernel. The field name will be "kernelX". Field default is 3 if created.
Definition at line 52 of file mlKernelModule.h.
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Y extent of kernel. The field name will be "kernelY". Field default is 3 if created.
Definition at line 54 of file mlKernelModule.h.
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Z extent of kernel. The field name will be "kernelZ". Field default is 1 if created.
Definition at line 56 of file mlKernelModule.h.
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Controls whether kernel is circular or rectangular (in 6D). The field name will be "makeSpherical". See also _createMakeSphericalField() which creates this field. Otherwise NULL is returned. Field default is Off (=false) if created.
Definition at line 68 of file mlKernelModule.h.
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Controls whether kernel is automatically normalized after each change. The field name will be "normalize". See also _createNormalizeField() which creates this field. Otherwise NULL is returned. Field default is Off (=false) if created.
Definition at line 79 of file mlKernelModule.h.
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If created this field contains the number of voxels in the kernel. See also _createNumKernelElementsField() which creates this field. Otherwise NULL is returned. The field name will be "numKernelElements", and the field default results from the created default kernel. Note that this field is only intended as a read-only field.
Definition at line 130 of file mlKernelModule.h.
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The maximum value used for the output image if _useAutoMinMax is on. See also _createMinMaxFields() which creates this field. Otherwise NULL is returned. The field name will be "outputMax", field default is 0 if created.
Definition at line 223 of file mlKernelModule.h.
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The minimum value used for the output image if _useAutoMinMax is on. See also _createMinMaxFields() which creates this field. Otherwise NULL is returned. The field name will be "outputMin", field default is 0 if created.
Definition at line 218 of file mlKernelModule.h.
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Field which assigns the current settings of automatically determined minimum/maximum values of already calculated pages to the output image. The field name will be "setAutoMinMax". See also _createAutoCalcMinMaxFields() which creates this field. Otherwise NULL is returned. Field default is off(=false) if created.
Definition at line 208 of file mlKernelModule.h.
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A field enabling the usage of the _externalKernelFld if true. The field name will be "useExternalKernel". See also _createExternalKernel() which creates this field. Otherwise NULL is returned. Field default is off if created.
Definition at line 97 of file mlKernelModule.h.
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A field enabling the usage of the _imageIntervalMinFld and _imageIntervalMaxFld if true. The field name will be "useIntervalOfFilteredVoxels". See also _createImageIntervalFields() which creates this field. Otherwise NULL is returned. Field default is off if created.
Definition at line 156 of file mlKernelModule.h.
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A field enabling the usage of the _kernelIntervalMinFld and _kernelIntervalMaxFld if true. The field name will be "useIntervalOfVoxelsForFiltering". See also _createKernelIntervalFields() which creates this field. Otherwise NULL is returned. Field default is off if created.
Definition at line 182 of file mlKernelModule.h.
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If enabled then contents of _outputMinFld and _outputMaxFld will be used as minimum and maximum values of the output image. See also _createMinMaxFields() which creates this field. Otherwise NULL is returned. The field name will be "useMinMax", field default is false if created.
Definition at line 229 of file mlKernelModule.h.
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Called when any parameter field is changed. field points to the field which has been changed and whose new state has to be handled.
Reimplemented from ml::Module.
Reimplemented in ml::MorphologyFilter, ml::RankFilter, ml::RobertsFilter, ml::SigmaFilter, ml::Sobel3DFilter, and ml::SurroundFilter.