mlDicomToMLTools.h File Reference

#include "MLDicomToMLToolsSystem.h"
#include "mlDICOMCachedIOFileHandle.h"
#include "mlDicomFrameSelectionTools.h"
#include "mlDicomFrameSetMinMaxCalculation.h"
#include "mlDicomOverlayTools.h"
#include "mlDicomToMLSubImageTools.h"
#include "mlDICOMTagSpectTools.h"
#include <mlModuleIncludes.h>
#include <DCMTree_Lib.h>

Go to the source code of this file.

Namespaces
namespace	ml
	Defines the class GetTileJob.
namespace	ml::DICOMTagTools
	A namespace collecting tools related to DICOM tags and tree tools.
namespace	ml::DicomToMLTools
	A collection of DICOM tool functions.

Enumerations
enum	ml::DicomToMLTools::FillPageMethods {   ml::DicomToMLTools::FILL_WITH_IMG_FILE_READER_WO_DICOM = 0 , ml::DicomToMLTools::FILL_WITH_IMG_FILE_READER , ml::DicomToMLTools::FILL_WITH_SPECTROSCOPY_DATA_TAG_DATA , ml::DicomToMLTools::FILL_WITH_PIXEL_DATA_TAG_DATA ,   ml::DicomToMLTools::FILL_WITH_DEFAULT_FILL_VAL , ml::DicomToMLTools::FILL_DO_NOT_FILL }
	Methods how to fill a page with data from the DICOM file or tree. More...
enum	ml::DicomToMLTools::OutputDataTypeSelector {   ml::DicomToMLTools::NoChange = 0 , ml::DicomToMLTools::Automatic , ml::DicomToMLTools::UseMLuint8 , ml::DicomToMLTools::UseMLint8 ,   ml::DicomToMLTools::UseMLuint16 , ml::DicomToMLTools::UseMLint16 , ml::DicomToMLTools::UseMLuint32 , ml::DicomToMLTools::UseMLint32 ,   ml::DicomToMLTools::UseMLFloat , ml::DicomToMLTools::UseMLDouble }
	Specifies whether the output voxel type shall be adopted when the data is scaled. More...
enum	{ ml::DicomToMLTools::NumOutputDataTypeSelectors = UseMLDouble +1 }
	Number of available OutputDataTypeSelectors modes. More...

Functions
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::convertToImageProperties (DCMTree::StructuredMFPtr &baseSMFPtr, const std::string &firstFileName, PagedImage &resultImgProps, FillPageMethods *fillPageMethod, const ZTUFileNameSet *setOfFileHandles, double defaultFillValue, const ImageToMultiFileVolumeConversionParameters &conversionParameters, const std::string &versionString, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT size_t	ml::DicomToMLTools::getVoxelSize (DCMTree::Const_TreePtr treePtr, double &voxSizeX, double &voxSizeY, double &voxSizeZ, bool replaceOnlyIfFound, bool *isPrecise, std::vector< DCMTree::RawTagId > *usedTags, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::applyPaletteInfosToPagedImage (const DICOMTagTools::DicomPaletteInfo &paletteInfos, PagedImage &pagedImage, const bool adjustToLUTType=false)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::applySubImageColorLookUp (const SubImage &inSubImg, const DICOMTagTools::DicomPaletteInfo &paletteInfo, SubImage &outSubImg)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::applyPhotometricInterpretationChangesToPagedImage (const DCMTree::Const_TreePtr &dcmTree, PagedImage &pagedImage)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::applyPhotometricInterpretationToSubImg (DCMTree::Const_TreePtr dcmTree, const SubImage &inSubImg, const double minVoxelValue, const double maxVoxelValue, SubImage &outSubImg)
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::getSpectDICOMImageProperties (DCMTree::Const_TreePtr treePtr, const std::string &fileNameUTF8, PagedImage &outInfos, Vector4 &rotAxisAndRadians, Vector3 &ipp, Vector3 &relMRSPositionVector, Vector3 &mrsPositionVector, Vector3 &voiVector, Vector3 &fovVector, bool useOldWorldMatrixCalculation, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::copySpectData (SubImage &outSubImg, const ImageVector &outImgExtent, const DICOMTagTools::SpectComplex *mrsData, size_t spectDataSizeInBytes)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::isImageFrameNotOfBits (DCMTree::Const_TreePtr treePtr)
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::setWorldMatrixFromDcmTree (DCMTree::Const_TreePtr treePtr, PagedImage &outInfos, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT MLDataType	ml::DicomToMLTools::getMLDataTypeFromDCMTree (DCMTree::Const_TreePtr treePtr, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::checkAndCorrectImageExtentAccordingToPixelData (DCMTree::Const_TreePtr treePtr, size_t pixelDataSizeInBytes, ImageVector &imgExt, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::determineImageExtentsFromDCMTree (DCMTree::Const_TreePtr treePtr, ImageVector &imgExt, std::vector< std::string > *cDimInfos, bool overrideBadTagInfos, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::getAnyDICOMImageProperties (DCMTree::Const_TreePtr treePtr, PagedImage &outInfos, bool overrideBadTagInfos, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT std::string	ml::DicomToMLTools::determineBasicREGProperties (DCMTree::Const_TreePtr treePtr, size_t extent[3], double voxelSize[3], MLErrorCode &errCode, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT std::string	ml::DicomToMLTools::determineREGProperties (DCMTree::Const_TreePtr treePtr, ImageVector &extent, Vector3 &voxelSize, SubImage *subImage, MLErrorCode *errCode, DicomMessageCollector &dcmMsgCollector)
MLDICOM_TO_ML_TOOLS_EXPORT bool	ml::DicomToMLTools::hasValidNonImageModality (DCMTree::Const_TreePtr treePtr)
MLDICOM_TO_ML_TOOLS_EXPORT MLDataType	ml::DicomToMLTools::determineOutputVoxelType (DCMTree::StructuredMFPtr &srcVolumeSMFTree, const MLDataType inVoxDataType, const SubImageBox &volumeBox, const double inDataRangeMin, const double inDataRangeMax, const OutputDataTypeSelector voxelTypeSelector, const VoxelDoubleOperations operationMode, const PositionSpecificDoubleVector &posDbls, const VoxelDoubleOperations defaultOperationMode, const double defaultOperationDouble, double &resultRangeMin, double &resultRangeMax)
MLDICOM_TO_ML_TOOLS_EXPORT void	ml::DicomToMLTools::determineDCMTreeInfo (DCMTree::Const_TreePtr dcmTree, DCMTreeInfo &dcmTreeInfo)
	Stores some statistical information from dcmTree in dcmTreeInfo.
MLDICOM_TO_ML_TOOLS_EXPORT DCMTree::Const_StructuredMFPtr	ml::DicomToMLTools::getSMFTreeFromPagedImage (const PagedImage &pImg)

Variables
MLDICOM_TO_ML_TOOLS_EXPORT const char *const	ml::DicomToMLTools::OutputDataTypeSelectorsStrings [NumOutputDataTypeSelectors]
	Strings according to OutputDataTypeSelector.

Detailed Description

Tool class with many tool functions for the conversion of DICOM information and tag values to comparable ML information objects.

Author

Wolf Spindler

Date

2011-03-03

Definition in file mlDicomToMLTools.h.